Phylogenetic Tree (0.1)
- Phylogenetic Tree download link: http://plone.org/products/phylogenetictree/releases
- Homepage of Phylogenetic Tree: http://plone.org/products/phylogenetictree/
- Description source: http://www.geojeff.org/software/phylogenetictree
PhylogeneticTree uses the ReportLab toolkit to generate a phylogenetic tree plot and its own routines to emit SVG and simple HTML renderings.
PhylogeneticTree is a folderish Archetypes-based Plone/Zope product. The idea is to use various renderers to create images, PDF files, and/or SVG versions of the cladogram and store them. This allows flexibility for a user of PhylogeneticTree to offer several format versions, if needed. PhylogeneticTree takes input of the following items:
Javascript tooltips are used to show short descriptions of characters when the user mouses over a node.
- row height (vertical internode spacing, in pixels)
- column width (lateral internode spacing, in pixels)
- characters, entered as comma-separated values on separate lines. Characters are specified by:
- character number (for easy reference in the node descriptions)
- short description
- long description
- nodes, entered as comma-separated values on separate lines. Nodes are specified by:
- parent (taxon name of parent)
- taxon name
- characters (entered like this, by character number:
[1,2,4,9]
) - row position
- column position
- font size
- line style (solid, dashed)
- line base style (connected, gapped)
- line stroke width
- branch direction (root, left, up, right)
- line color (line_red, line_green, line_blue (each 0-255)
- node style (circle_solid, circle_open, square_solid, square_open)
- node size (in pixels)
- node skew (angle, negative for left, 0 for up, positive for right)
- node color (node_red, node_green, node_blue (each 0-255)